CCE Publications


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Journal Articles

Karasti, H., and K. Baker, Digital Data Practices and the Global Long Term Ecological Research Program. International Journal of Digital Curation , 3 (2), 42-58, 2008. CCE LTER Contribution #0146; AR #117.
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Aronova, E., K. Baker, and N. Oreskes, From the International Geophysical Year to the International Biological Program: Big Science and Big Data in Biology, 1957-present. Historical Studies in the Natural Sciences, accepted (2009). CCE LTER Contribution #0145; AR #116.

Sieracki, M. E., I. C. Gilg, E. C. Thier, N. J. Poulton, and R. Goericke, Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest Atlantic. Limnology and Oceangraphy, 51 (1), 38-46, 2006. CCE LTER Contribution #0144; AR #114.
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McClatchie, S., R. Goericke, F. B. Schwing, S. B. Bograd, W. Peterson, R. Emmett, R. Charter, W. Watson, N. Lo, K. Hill, C. Collins, M. Kahru, B. G. Mitchell, J. A. Koslow, J. Gomes-Valdes, B. E. Lavaniegos, G. Gaxiola-Castro, J. Gottschalck, M. L'Heureux, Y. Xue, M. Manzano-Sarabia, E. Bjorkstedt, S. Ralston, J. Field, L. Rogers-Bennet, L. Munger, G. Campbell, K. Merkens, D. Camacho, A. Havron, A. Douglas, and J. Hildebrand, The State of the California Current, Spring 2008-2009: Cold conditions drive regional differences in coastal production. CalCOFI Reports, 50, 43-68, 2009. CCE LTER Contribution #0143; AR #114.
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Goetze, E., and M. D. Ohman, Integrated molecular and morphological biogeography of the calanoid copepod family Eucalanidae. Deep-Sea Research II, in press (2010). CCE LTER Contribution #0142; AR #113.

Gorsky, G., M. D. Ohman, M. Picheral, S. Gasparini, L. Stemmann, J. -B. Romagnan, A. Cawood, S. Pesant, C. García-Comas, and F. Prejger, Digital zooplankton image analysis using the ZooScan integrated system. Journal of Plankton Research, 32 (3), 285-303, 2010. DOI 10.1093/plankt/fbp124. CCE LTER Contribution #0141; AR #112.
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Meador, T. B., L. I. Aluwihare, and C. Mahaffey, Isotopic heterogeneity and cycling of organic nitrogen in the oligotrophic ocean. Limnology and Oceanography, 52 (3), 934-947, 2007. CCE LTER Contribution #0139; AR #111.
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Wolf, S. G., W. J. Sydeman, C. L. Abraham, J. M. Hipfner, B. Tershy, and D. Croll, Range-wide reproductive consequences of climate variability for the seabird Cassin’s Auklet Ptychoramphus aleuticus. Ecology, 90 (3), 742-753, 2009. CCE LTER Contribution #0138; AR #110.
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Wolf, S. G., M. A. Snyder, W. J. Sydeman, and D. A. Croll, Predicting population consequences of ocean climate change for an ecosystem sentinel, the seabird Cassin’s auklet. Global Change Biology, in press (2009). CCE LTER Contribution #0137; AR #109.

Sydeman, W. J., and S. J. Bograd, Marine ecosystems, climate and phenology: Introduction. Marine Ecology Progress Series, 393, 185-188, 2009. DOI 10.3354/meps08382. CCE LTER Contribution #0136; AR #108.
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Schwing, F. B., R. M. Mendelssohn, S. J. Bograd, J. E. Overland, M. Wang, and S. I. Ito, Climate change, teleconnection patterns, and regional processes forcing marine populations in the Pacific. Journal of Marine Systems, 79, 245-257, 2010. DOI 10.1016/j.jmarsys.2008.11.027. CCE LTER Contribution #0135; AR #107.
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Mitchell, B. G., and M. Kahru, Bio-optical algorithms for ADEOS-2 GLI. Journal of the Remote Sensing Society of Japan, 29 (1), 80-85, 2009. CCE LTER Contribution #0134; AR #106.
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Murakami, H., K. Sasaoka, K. Hosoda, H. Fukushima, M. Toratani, R. Frouin, B. G. Mitchell, M. Kahru, P. -Y. Deschamps, D. Clark, S. Flora, M. Kishino, S. -I. Saitoh, I. Asanuma, A. Tanaka, H. Sasaki, K. Yokouchi, Y. Kiyomoto, H. Saito, C. Dupouy, A. Siripong, S. Matsumura, and J. Ishizaka, Validation of ADEOS-2 GLI ocean color products using in-situ observations. Journal of Oceanography, 62 (3), 373-393, 2006. CCE LTER Contribution #0133; AR #105.
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Tai, V., and B. Palenik, Temporal variation of Synechococcus clades at a coastal Pacific Ocean monitoring site. The ISME Journal, 3, 903-915, 2009. DOI 10.1038/ismej.2009.35. CCE LTER Contribution #0132; AR #104.
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Décima, M., M. R. Landry, and R. Rykaczewski, Broad-scale patterns in mesozooplankton biomass and grazing in the Eastern Equatorial Pacific. Deep-Sea Research II, accepted (2009). CCE LTER Contribution #0131; AR #103.

Décima, M., M. D. Ohman, and A. DeRobertis, Body size-dependence of euphausiid spatial patchiness. Limnology and Oceanography, 55 (2), 777-788, 2010. CCE LTER Contribution #0130; AR #102.
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Smith, Jr., K. L., H. A. Ruhl, B. J. Betts, D. S. M. Billett, R. S. Lampitt, and R. S. Kaufmann, Climate, carbon cycling and deep-ocean ecosystems. Proceedings of the Natural Academy of Sciences, 106 (46), 19211–19218, 2009. DOI 1073/pnas.0908322106. CCE LTER Contribution #0129; AR#101.
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Holland, N. D., W. J. Jones, J. Ellena, H. A. Ruhl, and K. L. Smith, Jr., A new deep-sea species of epibenthic acorn worm (Hemichordata, Enteropneusta). Zoosystema, 31 (2), 333-346, 2009. CCE LTER Contribution #0128; AR#100.
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Poulin, F., and P. J. S. Franks, Size-structured planktonic ecosystems: constraints, controls, and assembly instructions. Journal of Plankton Research, 2010. DOI 10.1093/plankt/fbp145. CCE LTER Contribution #0127; AR#88.
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Menge, B. A., F. Chan, K. Nielsen, E. Di Lorenzo, and J. Lubchenco, Climatic variation alters supply-side ecology: impact of climate patterns on phytoplankton and mussel recruitment. Ecological Monographs, 79 (3), 379-395, 2009. CCE LTER Contribution #0126; AR#82.
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Porter, J. H., E. Nagy, T. K. Kratz, P. Hanson, S. L. Collins, and P. Arzberger, New eyes on the world: advanced sensors for ecology. BioScience, 59, 385-397, 2009. CCE LTER Contribution #0125; AR#99.
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Gilfillan, L. R., M. D. Ohman, M. J. Doyle, and W. Watson, Occurrence of plastic micro-debris in the southern California Current System. California Cooperative Oceanic Fisheries Investigations Reports, 50, 123-133, 2009. CCE LTER Contribution #0124; AR#98.
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Linacre, L. P., M. R. Landry, J. R. Lara-Lara, J. M. Hernandez-Ayon, and C. Bazan-Guzman, Picoplankton dynamics during contrasting seasonal oceanographic conditions in a coastal upwelling station off Northern Baja California, México. Journal of Plankton Research, 32 (4), 539-557, 2010. DOI 10.1093/plankt/fbp148. CCE LTER Contribution #0123; AR#97.
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Aksnes, D. L., and M. D. Ohman, Multi-decadal shoaling of the euphotic zone in the southern sector of the California Current System. Limnology and Oceanography, 54 (4), 1272-1281, 2009. CCE LTER Contribution #0114; AR#96.
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Hereu, C. M., B. E. Lavaniegos, and R. Goericke, Grazing impact of salp (Tunicata, Thaliacea) assemblages in the eastern tropical North Pacific. Journal of Plankton Research, 2010. DOI 10.1093/plankt/fbq005. CCE LTER Contribution #0113; AR#95.

McClatchie, S., R. Goericke, J. A. Koslow, F. B. Schwing, S. J. Bograd, R. Charter, W. Watson, N. Lo, K. Hill, J. Gottschalk, M. L’Heureux, Y. Xue, W. T. Peterson, R. Emmett, C. Collins, G. Gaxiola-Castro, R. Durazo, M. Kahru, B. G. Mitchell, K. D. Hyrenbach, W. J. Sydeman, R. W. Bradley, P. Warzybok, and E. Bjorkstedt, The State of the California Current, 2007-2008: La Nina Conditions and their Effects on the Ecosystem. California Cooperative Oceanic Fisheries Investigations Reports, 49, 39-76, 2008. CCE LTER Contribution #0112; AR#94.
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Landry, M. R., M. D. Ohman, R. Goericke, M. R. Stukel, and K. Tsyrklevich, Lagrangian studies of phytoplankton growth and grazing relationships in a coastal upwelling ecosystem off Southern California. Progress in Oceanography, 83, 208-216, 2009. DOI 10.1016/j.pocean.2009.07.026. CCE LTER Contribution #0110; AR#93.
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Chen, B., H. Liu, M. R. Landry, M. Dai, B. Huang, and J. Sun, Close coupling between phytoplankton growth and microzooplankton grazing in the western South China Sea: the importance of Synechococcus. Limnology and Oceanography, 54 (4), 1084-1097, 2009. CCE LTER Contribution #0109; AR#92.
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Chen, B., H. Liu, M. R. Landry, M. Chen, J. Sun, L. Shek, X. Chen, and P. J. Harrison, Estuarine nutrient loading affects phytoplankton growth and microzooplankton grazing at two contrasting sites in Hong Kong coastal waters. Marine Ecology Progress Series, 379, 77-90, 2009. DOI 10.3354/meps07888. CCE LTER Contribution #0108; AR#91.
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Hannides, C. C. S., B. N. Popp, M. R. Landry, and B. S. Graham, Quantification of zooplankton trophic position in the North Pacific Subtropical Gyre using stable nitrogen isotopes. Limnology and Oceanography, 54 (1), 50-61, 2009. CCE LTER Contribution #0107; AR#90.
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Hannides, C. C. S., M. R. Landry, C. R. Benitez-Nelson, R. M. Styles, J. P. Montoya, and D. M. Karl, Export stoichiometry and migrant-mediated flux of phosphorus in the North Pacific Subtropical Gyre. Deep-Sea Research I, 56, 73-88, 2008. DOI 10.1016/j.dsr.2008.08.003. CCE LTER Contribution #0106; AR#89.
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Poulin, F., and P. J. S. Franks, Size-structured planktonic ecosystems: constraints, controls, and assembly instructions. Journal of Plankton Research, accepted (2009). CCE LTER Contribution #0105.

Fiechter, J., A. M. Moore, C. A. Edwards, K. W. Bruland, E. Di Lorenzo, C. V. W. Lewis, T. M. Powell, E. N. Curchitser, and K. Hedstrom, Modeling iron limitation on primary production in the coastal Gulf of Alaska. Deep-Sea Research II, in press (2009). DOI 10.1016/j.dsr2.2009.02.010. CCE LTER Contribution #0102; AR#87.

Ceballos, L., E. Di Lorenzo, N. Schneider, and B. Taguchi, North Pacific Gyre Oscillation synchronizes climate fluctuations in the eastern and western North Pacific. Journal of Climate, in press (2009). DOI 10.1175/2009JCLI2848.1. CCE LTER Contribution #0101; AR#86.

Sydeman, W. J., K. L. Mills, S. A. Thompson, J. A. Santora, D. F. Bertram, K. H. Morgan, M. A. Hipfner, B. K. Wells, and S. G. Wolf, Seabirds and climate in the California Current – a synthesis of change: Troubling trends or meandering variability. California Cooperative Oceanic Fisheries Investigation Reports, in press (2009). CCE LTER Contribution #0100; AR#84.

Baker, K., and L. Yarmey, Data Stewardship: Environmental Data Curation and a Web-of-Repositories. International Journal of Digital Curation, 4 (2), 2009. CCE LTER Contribution #0099; AR#85.
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Dupont, C. L., K. N. Buck, B. Palenik, and K. Barbeau, Nickel utilization in phytoplankton assemblages from contrasting oceanic regimes. Deep-Sea Research Part I, accepted (2010). CCE LTER Contribution #0098; AR#83.

Menge, B. M., F. Chan, K. J. Nielsen, E. Di Lorenzo, and J. Lubchenco, Climatic variation alters supply-side ecology: impact of climate. Ecological Monograph, accepted. CCE LTER Contribution #0097.

Chhak, K., E. Di Lorenzo, N. Schneider, and P. Cummins, Forcing of low-frequency ocean variability in the Northeast Pacific. Journal of Climate, 22 (5), 1255-1276, 2009. DOI 10.1175/2008JCLI2639.1. CCE LTER Contribution #0096; AR#81.
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Schroeder, I. D., W. J. Sydeman, N. Sarkar, S. J. Bograd, F. B. Schwing, and S. A. Thompson, Winter pre-conditioning of seabird phenology in the California Current. Marine Ecology Progress Series, 393, 211-223, 2009. DOI 10.3354/meps08103. CCE LTER Contribution #0095; AR #80.
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Di Lorenzo, E. J., J. Fiechter, N. Schneider, A. Bracco, A. J. Miller, P. J. S. Franks, S. J. Bograd, A. M. Moore, A. C. Thomas, W. J. Crawford, A. Peña, and A. Hermann, Nutrient and salinity decadal variations in the central and eastern North Pacific. Geophysical Research Letters, 36, L14601, 2009. DOI 10.1029/2009GL038261. CCE LTER Contribution #0094; AR#79.
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Bograd, S. J., I. Schroeder, N. Sarkar, X. Qiu, W. J. Sydeman, and F. B. Schwing, The phenology of coastal upwelling in the California Current. Geophysical Research Letters, 36, L01602, 2009. DOI 10.1029/2008GL035933. CCE LTER Contribution #0093; AR#78.
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Bond, N. A., H. P. Batchelder, and S. J. Bograd, Forecasting northeast Pacific ecosystem responses to the La Niña of Fall-Winter 2007. EOS, Transactions of the American Geophysical Union, 89 (35), 321-322, 2008. DOI 10.1029/2008EO350002. CCE LTER Contribution #0092; AR#77.
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Vardaro, M. F., H. A. Ruhl, and K. L. Smith, Jr., Climate variation, carbon flux, and bioturbation in the abyssal North Pacific. Limnology and Oceanography, 54 (6), 2081-2088, 2009. CCE LTER Contribution #0090; AR#76.
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Sherman, A. D., and K. L. Smith, Jr., Deep-sea benthic boundary layer communities and food supply: a long-term monitoring strategy. Deep-Sea Research II, 56 (19-20), 1754-1762, 2009. DOI 10.1016/j.dsr2.2009.05.020. CCE LTER Contribution #0089; AR#75.
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McGill, P. R., A. D. Sherman, B. W. Hobson, R. G. Henthorn, and K. L. Smith, Jr., Initial deployments of the Rover, an autonomous bottom-transecting instrument platform. Journal of Ocean Technology, 4 (2), 54-70, 2009. CCE LTER Contribution #0088; AR#74.

Drazen, J. C., B. N. Popp, C. A. Choy, T. Clemente, L. De Forest, and K. L. Smith, Jr., Bypassing the abyssal benthic food web: Macrourid diet in the eastern North Pacific inferred from stomach content and stable isotopes analyses. Limnology and Oceanography, 53, 2644-2654, 2008. CCE LTER Contribution #0087; AR#73.
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Drazen, J. C., C. F. Phleger, M. A. Guest, and P. D. Nichols, Lipid, sterols and fatty acid composition of abyssal holothurians and ophiuroids from the North-East Pacific Ocean: Food web implications. Comparative Biochemistry and Physiology, Part B, 151, 79-87, 2008. DOI 10.1016/j.cbpb.2008.05.013. CCE LTER Contribution #0086; AR#72.
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Hsieh, C. -H., H. -J. Kim, W. Watson, E. Di Lorenzo, and G. Sugihara, Climate-driven changes in abundance and distribution of larvae of oceanic fishes in the southern California region. Global Change Biology, (online version), 1-16, 2009. DOI 10.1111/j.1365-2486.2009.01875.x. CCE LTER Contribution #0085.
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Samo, T. J., F. Malfatti, and F. Azam, A new class of transparent organic particles in seawater visualized by a novel fluorescence approach. Aquatic Microbial Ecology, 53, 307-321, 2008. DOI 10.3354/ame01251. CCE LTER Contribution #0083.
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Barlow, J., M. Kahru, and B. G. Mitchell, Cetacean biomass, prey consumption, and primary production requirements in the California Current ecosystem. Marine Ecology Progress Series, 371, 285-295, 2008. DOI 10.3354/meps07695. CCE LTER Contribution #0082.
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Ohman, M. D., and J. E. Hobbie, Aquatic Research in the U.S. LTER Network. Limnology and Oceanography Bulletin, 17 (3), 74-79, 2008. CCE LTER Contribution #0081.
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Kahru, M., R. Kudela, M. Manzano-Sarabia, and B. G. Mitchell, Trends in primary production in the California Current detected with satellite data. Journal of Geophysical Research, 114 (C02004), 7 pgs, 2009. DOI 10.1029/2008JC004979. CCE LTER Contribution #0077.
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Maye, A., C. -H. Hsieh, G. Sugihara, and B. Brembs, Order in spontaeous behavior. PLoS ONE, 2 (5), e443, 2007. DOI 10.137/journal.pone.0000443. CCE LTER Contribution #0076.
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May, R. M., S. A. Levin, and G. Sugihara, Ecology for bankers. Nature, 451, 893-895, 2008. DOI 10.1038/451893a. CCE LTER Contribution #0075.
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Ohman, M. D., E. G. Durbin, J. A. Runge, B. K. Sullivan, and D. B. Field, Relationship of predation potential to mortality of Calanus finmarchicus on Georges Bank, Northwest Atlantic. Limnology and Oceanography, 53 (4), 1643-1655, 2008. CCE LTER Contribution #0074.
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Davis, R. E., M. D. Ohman, B. Hodges, D. L. Rudnick, and J. T. Sherman, Glider surveillance of physics and biology in the southern California Current System. Limnology and Oceanography, 53 (5, part 2), 2151-2168, 2008. CCE LTER Contribution #0073.
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Ohman, M. D., and C. -H. Hsieh, Spatial differences in mortality of Calanus pacificus within the California Current System. Journal of Plankton Research, 30, 359-366, 2008. CCE LTER Contribution #0072.
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Hsieh, C. -H., C. Anderson, and G. Sugihara, Extending nonlinear analysis to short ecological time series. American Naturalist, 171 (1), 71-80, 2008. DOI 10.1086/524202. CCE LTER Contribution #0070.
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Landry, M. R., M. Decima, M. P. Simmons, C. C. S. Hannides, and E. Daniels, Mesozooplankton biomass and grazing responses to Cyclone Opal, a subtropical mesoscale eddy. Deep-Sea Research II, 55 (10), 1378-1388, 2008. DOI 10.1016/j.dsr2.2008.01.005. CCE LTER Contribution #0069.
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Landry, M. R., S. L. Brown, Y. M. Rii, K. E. Selph, R. R. Bidigare, E. J. Yang, and M. P. Simmons, Depth-stratified phytoplankton dynamics in Cyclone Opal, a subtropical mesoscale eddy. Deep-Sea Research Part II, 55 (10), 1348-1359, 2008. DOI 10.1016/j.dsr2.2008.02.001. CCE LTER Contribution #0068.
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Brown, S. L., M. R. Landry, K. E. Selph, E. J. Yang, Y. M. Rii, and R. R. Bidigare, Diatoms in the desert: Plankton community response to a mesoscale eddy in the subtropical North Pacific. Deep-Sea Research II, 55 (10), 1321-1333, 2008. DOI 10.1016/j.dsr2.2008.02.012. CCE LTER Contribution #0067.
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Benitez-Nelson, C. R., R. R. Bidigare, T. D. Dickey, M. R. Landry, C. L. Leonard, S. L. Brown, F. Nencioli, Y. M. Rii, K. Maiti, J. W. Becker, T. S. Bibby, W. Black, W. -J. Cai, C. A. Carlson, F. Chen, V. S. Kuwahara, C. Mahaffey, P. M. McAndrew, P. D. Quay, M. S. Rappé, K. E. Selph, M. P. Simmons, and E. J. Yang, Mesoscale eddies drive increased silica export in the subtropical Pacific Ocean. Science, 316 (5827), 1017-1021, 2007. DOI 10.1126/science.1136221. CCE LTER Contribution #0066.
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Kim, H. -J., A. J. Miller, J. McGowan, and M. Carter, Coastal phytoplankton blooms in the Southern California Bight. Progress in Oceanography, 82, 137-147, 2009. DOI 10.1016/j.pocean.2009.05.002. CCE LTER Contribution #0064; AR#56.
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Chekalyuk, A., and M. Hafez, Advanced laser fluorometry of natural aquatic environments. Limnology and Oceanography: Methods, 6, 591-609, 2008. CCE LTER Contribution #0063.
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Kahru, M., and B. G. Mitchell, Ocean color reveals increased blooms in various parts of the World. EOS, Trans. AGU, 89 (18), p. 170, 2008. CCE LTER Contribution #0062.
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Baker, K. S., and C. Chandler, Enabling long-term oceanographic research: Changing data practices, information management strategies and informatics. Deep-Sea Research II: Special Series Palmer Long-Term Ecological Research, 55 (18-19), 2132-2142, 2008. DOI 10.1016/j.dsr2.2008.05.009. CCE LTER Contribution #0059.

Booth, J. A., H. A. Ruhl, L. Lovell, D. M. Bailey, and K. L. Smith, Jr., Size–frequency dynamics of NE Pacific abyssal ophiuroids (Echinodermata: Ophiuroidea). Marine Biology, 154 (6), 933-941, 2008. DOI 10.1007/s00227-008-0982-3. CCE LTER Contribution #0058.
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Smith, Jr., K. L., H. A. Ruhl, R. S. Kaufmann, and M. Kahru, Tracing abyssal food supply back to upper-ocean processes over a 17-year time series in the NE Pacific. Limnology and Oceanography, 53, 2655-2667, 2008. CCE LTER Contribution #0057; AR#51.
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Ruhl, H. A., J. A. Ellena, and K. L. Smith, Jr., Connections between climate, food limitation, and carbon cycling in abyssal sediment communities: a long time-series perspective. Proceedings of the National Academy of Sciences USA, 105, 17006-17011, 2008. DOI 10.1073/pnas.0803898105. CCE LTER Contribution #0056; AR#50.
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Bograd, S. J., C. G. Castro, E. Di Lorenzo, D. M. Palacios, H. Bailey, W. Gilly, and F. P. Chavez, Oxygen declines and the shoaling of the hypoxic boundary in the California Current. Geophysical Research Letters, 35, L12607, 2008. DOI 10.1029/2008GL034185. CCE LTER Contribution #0054.
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Mantyla, A. W., S. J. Bograd, and E. L. Venrick, Patterns and controls of chlorophyll-a and primary production cycles in the Southern California Bight. Journal of Marine Systems, 73 (1), 48-60, 2008. DOI 10.1016/j.marsys.2007.08.001. CCE LTER Contribution #0053.
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Peña, M. A., and S. J. Bograd, Time series of the Northeast Pacific. Progress in Oceanography, 75 (2), 115-119, 2007. DOI 10.1016/j.pocean.2007.08.008. CCE LTER Contribution #0052.
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Rykaczewski, R. R., and D. M. Checkley, Influence of ocean winds on the pelagic ecosystem in upwelling regions. Proceedings of the National Academy of Sciences, 105 (6), 1965-1970 (+ 3 figs), 2008. CCE LTER Contribution #0051.
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Kahru, M., P. C. Fiedler, S. T. Gille, M. Manzano, and B. G. Mitchell, Sea level anomalies control phytoplankton biomass in the Costa Rica Dome area. Geophysical Research Letters, 34, L22601, 2007. DOI 10.1029/2007GL031631. CCE LTER Contribution #0050.

Millerand, F., and K. S. Baker, Who are the users? From a single user to a web of users in the design of a working standard. Information Systems Journal , 20, 137-161, 2010. DOI 10.1111/j.1365-2575.2009.00338.x. CCE LTER Contribution #0049; AR#26.

Danioux, E., P. Klein, and P. Rivière, Propagation of wind energy into the deep ocean through a fully turbulent mesoscale eddy field. Journal of Physical Oceanography, 38, 2224-2241, 2008. DOI 10.1175/2008JPO3821.1. CCE LTER Contribution #0048.
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Hopkinson, B. M., and K. Barbeau, Influence of iron on phytoplankton in subsurface chlorophyll maximum communities of the eastern Pacific. Limnology and Oceanography, 53 (4), 1303-1318, 2008. CCE LTER Contribution #0047.
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Lavaniegos, B. E., and M. D. Ohman, Coherence of long-term variations of zooplankton in two sectors of the California Current System. Progress in Oceanography, 75 (1), 42-69 (+ electronic supplement), 2007. DOI 10.1016/j.pocean.2007.07.002. CCE LTER Contribution #0046.
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Roth, J. E., K. L. Mills, and W. J. Sydeman, Chinook salmon (Oncorhynchus tshawytscha) – seabird covariation off central California and possible forecasting applications. Canadian Journal of Fisheries and Aquatic Sciences, 64, 1080-1090, 2007. CCE LTER Contribution #0045.

Kim, H. -J., and A. J. Miller, Did the thermocline deepen in the southern California Current after the 1976-77 climate regime shift?. Journal of Physical Oceanography, 37, 1733-1739, 2007. CCE LTER Contribution #0044.

Di Lorenzo, E., N. Schneider, K. M. Cobb, K. Chhak, P. J. Franks, A. J. Miller, J. C. McWilliams, S. J. Bograd, H. Arango, E. Curchister, T. M. Powell, and P. Rivière, North Pacific Gyre Oscillation links ocean climate and ecosystem change. Geophysical Research Letters, 2008. DOI 10.1029/2007GL032838. CCE LTER Contribution #0043; AR#23.
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Hsieh, C. H., S. C. Reiss, R. P. Hewitt, and G. Sugihara, Spatial analysis shows fishing enhances the climatic sensitivity of marine fishes. Canadian Journal of Fisheries and Aquatic Sciences, 65, 947-961, 2008. CCE LTER Contribution #0042.
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Peterson, B., R. Emmett, R. Goericke, E. Venrick, A. Mantyla, S. J. Bograd, F. B. Schwing, R. Hewitt, N. Lo, W. Watson, J. Barlow, M. Lowry, S. Ralston, K. A. Forney, B. E. Lavaniegos, W. J. Sydeman, D. Hyrenbach, R. W. Bradley, P. Warzybok, F. Chavez, K. Hunter, S. Benson, M. Weise, J. Harvey, G. Gaxiola-Castro, and R. Durazo, The State of the California Current, 2005-2006: Warm in the North, Cool in the South. California Cooperative Oceanic Fisheries Investigations Reports, 47, 30-74, 2006. CCE LTER Contribution #0041.

Ruhl, H. A., Community change in the variable resource habitat of the abyssal NE Pacific. Ecology, 89 (4), 991-1000, 2008. CCE LTER Contribution #0040.
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Vardaro, M. F., D. Parmley, and K. L. Smith, A study of possible “reef effects” caused by a long-term time lapse camera in the deep North Pacific. Deep-Sea Research I, 54, 1231-1240, 2007. CCE LTER Contribution #0039.

Ruhl, H. A., Abundance and size distribution dynamics of abyssal epibenthic megafauna in the Northeast Pacific. Ecology, 88 (3), 1250-1262, 2007. CCE LTER Contribution #0038.

Bailey, D. M., H. A. Ruhl, and K. L. Smith, Long-term change in benthopelagic fish abundance in the abyssal Northeast Pacific Ocean. Ecology, 87 (3), 549-555, 2006. CCE LTER Contribution #0037.

King, A. L., and K. Barbeau, Evidence for phytoplankton iron limitation in the southern California Current System. Marine Ecology Progress Series, 342, 91-103, 2007. CCE LTER Contribution #0035.

Chhak, K., and E. Di Lorenzo, Decadal variations in the California Current upwelling cells. Geophysical Research Letters, 34, L14604, 2007. CCE LTER Contribution #0034.

Mackas, D. L., W. T. Peterson, M. D. Ohman, and B. E. Lavaniegos, Zooplankton anomalies in the California Current system before and during the warm ocean conditions of 2005. Geophysical Research Letters, 33, L22S07, 2006. CCE LTER Contribution #0030.

Aksnes, D. L., M. Ohman, and P. Rivière, Optical effect on the nitracline in a coastal upwelling area. Limnology and Oceanography, 52 (3), 1179-1187, 2007. CCE LTER Contribution #0029.

Rivière, P., and P. Pondaven, Phytoplankton competitions in frontal oceanic regions. Journal of Marine Systems, 60, 345-364, 2006. CCE LTER Contribution #0028.

Rintoul, C. R., B. Langabeer-Schlagenhauf, K. H. Morgan, K. D. Hyrenbach, and W. J. Sydeman, Atlas of California Current Marine Bird and Mammal Distributions, Version 1. PRBO Technical Report, 2006. CCE LTER Contribution #0027.

Baker, K. S., and G. C. Bowker, Information Ecology: Open System Environment for Data, Memories, and Knowing. Journal of Intelligent Information Systems. BDEI Special Series, 29, 127-144, 2007. CCE LTER Contribution #0024.
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Hsieh, C. H., C. S.. Reiss, J. R.. Hunter, J. R.. Beddington, R. M.. May, and G. Sugihara, Fishing elevates variability in the abundance of exploited species. Nature, 443 (7113), 859-862, 2006. CCE LTER Contribution #0023.

Aksnes, D. L., Evidence for visual constraints in large marine fish stocks. Limnology and Oceanography, 52 (1), 198-203, 2007. CCE LTER Contribution #0021.

Sydeman, W. J., R. W. Bradley, P. Warzybok, C. L. Abraham, J. Jahncke, K. D. Hyrenbach, V. Kousky, J. M. Hipfner, and M. D. Ohman, Planktivorous Auklet Ptychoramphus aleuticus Responses to Ocean Climate, 2005: Unusual Atmospheric Blocking?. Geophysical Research Letters, 33 (22), L22S09, 2006. CCE LTER Contribution #0019.

Yen, P. P. W., W. J. Sydeman, S. J. Bograd, and K. D. Hyrenbach, Spring-time distributions of migratory marine birds in the southern California Current: Oceanic eddy associations and coastal habitat hotspots over 17 years. Deep-Sea Research, Part II, 53 (3-4), 399, 2006. CCE LTER Contribution #0018.

Karasti, H., K. S. Baker, and E. Halkola, Enriching the Notion of Data Curation in e-Science: Data Managing and Information Infrastructuring in the Long Term Ecological Research (LTER) Network. Journal of Computer Supported Cooperative Work: An International Journal, 15 (4), 321-358, 2006. CCE LTER Contribution #0013.
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Goericke, R., E. Venrick, A. Mantyla, S. J. Bograd, F. B. Schwing, A. Huyer, R. L. Smith, P. A. Wheeler, R. Hooff, W. T. Peterson, F. Chavez, C. Collins, B. Marinovic, N. Lo, G. Gaxioloa-Castro, R. Durazo, K. D. Hyrenbach, and W. J. Sydeman, The State of the California Current, 2004-2005: Still Cool?. California Cooperative Oceanic Fisheries Investigations Reports, 46, 32-71, 2005. CCE LTER Contribution #0012.
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Hsieh, C. H., and M. D. Ohman, Biological responses to environmental forcing: The Linear Tracking Window hypothesis. Ecology, 87 (8), 1932-1938, 2006. CCE LTER Contribution #0010.

Hereu, C. M., B. E. Lavaniegos, G. Gaxiola-Castro, and M. D. Ohman, Composition and potential grazing impact of salp assemblages off Baja California during the 1997-1999 El Niño and La Niña. Marine Ecology Progress Series, 318, 123-140, 2006. CCE LTER Contribution #0009.

Field, D. B., T. R. Baumgartner, C. D. Charles, V. Ferreira-Bartrina, and M. D. Ohman, Planktonic foraminifera of the California Current reflect twentieth century warming. Science, 311 (5757), 63-66, 2006. CCE LTER Contribution #0008.

Di Lorenzo, E., A. J. Miller, N. Schneider, and J. C. McWilliams, The warming of the California Current: dynamics and ecosystem implications. Journal of Physical Oceanography, 35 (3), 336-362, 2005. CCE LTER Contribution #0007.

Bograd, S. J., and A. W. Mantyla, On the subduction of upwelled waters in the California Current. Journal of Marine Research, 63 (5), 863-885, 2005. CCE LTER Contribution #0006.

Smith, K. L., R. J. Baldwin, H. A. Ruhl, M. Kahru, B. G. Mitchell, and R. S. Kaufmann, Climate effect on food supply to depths greater than 4,000 meters in the northeast Pacific. Limnology and Oceanography, 50 (1), 166-176, 2006. CCE LTER Contribution #0005.

Hsieh, C. H., S. M. Glaser, A. J. Lucas, and G. Sugihara, Distinguishing random environmental fluctuations from ecological catastrophes for the North Pacific Ocean. Nature, 435 (7040), 336, 2005. CCE LTER Contribution #0004.

Hsieh, C. H., C. Reiss, W. Watson, M. J. Allen, J. R. Hunter, R. N. Lea, R. Rosenblatt, P. E. Smith, and G. Sugihara, A comparison of long-term trends and variability in populations of larvae of exploited and unexploited fishes in the Southern California region: a community approach. Progress in Oceanography, 67 (1-2), 160-185, 2005. CCE LTER Contribution #0001.

Book Sections

Landry, M. R., Grazing processes and secondary production in the Arabian Sea: A simple food web synthesis with measurement constraints in Indian Ocean: Biogeochemical Processes and Ecological Variability, in press (2009). CCE LTER Contribution #0111; ARB#24.

May, R. M., M. Crawley, and G. Sugihara, Patterns in Multispecies Communities in Theoretical Ecology, edited by R. M. May, and A. McLean, Oxford University Press, 2007. CCE LTER Contribution #0071; ARB#16.

Cerullo, M. M., and B. E. Simmons, Sea Secrets: Tiny Clues to a Big Mystery, pp. 32, Moonlight Publishing, Layfayette, CO, 2008. CCE LTER Contribution #0065; ARB#15.

Bowker, G., K. S. Baker, F. Millerand, and D. Ribes, Towards Information Infrastructure Studies: Ways of Knowing in a Networked Environment in International Handbook of Internet Research, edited by J. Hunsinger, M. Allen, and L. Klasrup, Springer, in press (2009). CCE LTER Contribution #0060; ARB#7.

Millerand, F., and G. C. Bowker, Metadata Standard: Trajectories and Enactment in the Life of an Ontology in Formalizing Practices: Reckoning with Standards, Numbers and Models in Science and Everyday Life, edited by M. Lampland, and S. L. Star, Cornell University Press, 2009. CCE LTER Contribution #0036; ARB#5.

Sala, E., and G. Sugihara, Food-web theory provides guidelines for marine conservation, Chapter 13 in Food Webs: An Ecosystem Approach, 2005. CCE LTER Contribution #0002; ARB#1.

Reports

Overview of CCE LTER Ecological Research Site (Mid-term Site Review), SIO, La Jolla, 2007. CCE LTER Contribution #0122.
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Executive Summary of the CCE LTER (Mid-term Site Review), SIO, La Jolla, 2007. CCE LTER Contribution #0121.
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LTER Science Council Meeting and Field Trip, SIO, La Jolla, 2009. CCE LTER Contribution #0120.
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Simmons, B. E., Psst....We have a secret....and we would like to share it! in The SWMEA Connection, Summer 2008. CCE LTER Contribution #0104; ARB#23.
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Simmons, B. E., Unlocking the Clues of "Sea Secrets" in LTER Network News, Univ. of New Mexico, Albuquerque, Fall 2008. CCE LTER Contribution #0103; ARB#22.

Baker, K. S., and M. D. Ohman, CCE Holds First Annual Meeting in LTER Network News, Univ. of New Mexico, Spring 2006. CCE LTER Contribution #0022; ARB#30.
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Simmons, B., Assessment, Chapter 6 in Schoolyard LTER Education Handbook, 2005. CCE LTER Contribution #0003; ARB#2.
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Theses

Swart, N. C., Lateral carbon transport from the southern Benguela, Masters thesis, University of Cape Town, South Africa, Cape Town, 2008. CCE LTER Contribution #0140; ARB #33.

Soldevilla, M. S., Risso's and Pacific white-sided dolphins in the Southern California Bight: using echolocation clicks to study dolphin ecology, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0119; ARB#29.
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Glaser, S. M., Foraging ecology of North Pacific albacore in the California Current System, Ph.D. thesis, University of California, San Diego, 2009. CCE LTER Contribution #0118; ARB#28.
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Hansman, R., Microbial metabolism in the deep ocean, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0117; ARB#27.
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Rykaczewski, R., Influence of Oceanographic Variability on the Planktonic Prey and Growth of Sardine and Anchovy in the California Current Ecosystem, Ph.D. thesis, University of California, San Diego, 2009. CCE LTER Contribution #0116; ARB#26.
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Dupont, C., Physiological, ecological, and evolutionary studies of trace metal homeostasis in marine microbes, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0115; ARB#25.

Vardaro, M., Deep-sea Bioturbation and the Role of the Sea Urchin Echinocrepis rostrata, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0091; ARB#21.
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de Jesus, R., Natural Abundance Radiocarbon Studies of Dissolved Organic Carbon (DOC) in the Marine Environment, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0084; ARB#20.
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King, A., Iron distribution and phytoplankton iron limitation in the southern California Current System, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0080; ARB#18.

Kim, H. -J., Physical-biological climate changes in the Southern California Bight, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0079; ARB#19.

Hopkinson, B. M., Oceanographic and ecological consequences of iron localization in phytoplankton photosystems, Ph.D. thesis, University of California, San Diego, 2007. CCE LTER Contribution #0078; ARB#17.
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Romagnan, J. -B., Vertical habitat shift of mesozooplankton assemblages in the California Current, Masters thesis, Universite Pierre et Marie Curie, Paris, France, 2007. CCE LTER Contribution #0031; ARB#6.

Ruhl, H. A., Climate and food supply influences on mobile epibenthic megafauna populations in the abyssal NE Pacific from 1989 to 2004, Ph.D. thesis, University of California, San Diego, 2006. CCE LTER Contribution #0017; ARB#4.
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Hsieh, C. H., Separating environmental effects from fishing impacts on the dynamics of fish populations of the Southern California region, Ph.D. thesis, University of California, San Diego, 2006. CCE LTER Contribution #0016; ARB#3.

Conference Proceedings

Karasti, H., and K. S. Baker, Community Design – Growing One’s Own Information Infrastructure in Proceedings of the Participatory Design Conference, Bloomington, IN, 2008. CCE LTER Contribution #0061; ARB#8.
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Baker, K. S., and F. Millerand, Scientific Information Infrastructure Design: Information Environments and Knowledge Provinces in Proceedings of the American Society for Information Science and Technology ASIST 2007, pp. 1-6, Milwaukee, WI, 2007. CCE LTER Contribution #0033; ARB#31.
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Ribes, D., and K. S. Baker, Modes of Social Science Engagement in Community Infrastructure Design in Proceedings of the Third International Conference on Communities and Technologies, pp. 107-130, Springer, Michigan State University, 2007. CCE LTER Contribution #0032; ARB#32.
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Baker, K. S., and F. Millerand, Articulation Work Supporting Information Infrastructure Design: Coordination, Categorization, and Assessment in Practice in Proceedings of the 40th Hawaii International Conference on Science Systems, HICSS40, IEEE Computer Society, Big Island, Hawaii, 2007. CCE LTER Contribution #0026; ARB#9.
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Baker, K. S., and K. I. Stocks, Building Environmental Information Systems: Myths and Interdisciplinary Lessons in Proceedings of the 40th Hawaii International Conference on System Sciences, HICSS40, IEEE Computer Society, Big Island, Hawaii, 2007. CCE LTER Contribution #0025; ARB#14.
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Ribes, D., and K. S. Baker, Elements of Social Science Engagement in Information Infrastructure Design in Proceedings of the Seventh Annual International Conference on Digital Government Research, pp. 450, San Diego, CA, 2006. CCE LTER Contribution #0020; ARB#13.
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Ribes, D., K. S. Baker, F. Millerand, and G. C. Bowker, Comparative Interoperability Project: Configurations of Community, Technology, Organization in Proceedings of the second ACM/IEEE-CS Joint Conference on Digital Libraries, Academic Press, New York, 2005. CCE LTER Contribution #0015; ARB#12.
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Baker, K. S., D. Ribes, F. Millerand, and G. C. Bowker, Interoperability Strategies for Scientific Cyberinfrastructure: Research and Practice in Proceedings of the American Society for Information Systems and Technology, 2005. CCE LTER Contribution #0014; ARB#11.
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Baker, K. S., S. J. Jackson, and J. R. Wanetick, Strategies Supporting Heterogeneous Data and Interdisciplinary Collaboration: Towards an Ocean Informatics Environment in 38th Hawaii International Conference on System Science, HICSS38, IEEE Computer Society, Big Island, Hawaii, 2005. CCE LTER Contribution #0011; ARB#10.
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